Statistical Learning Estimation of Mutual Information (SLEMI) R-package: information-theoretic analysis of multivariate single-cell responses, which includes an estimation of information measures and discrimination probabilities (paper).
Matlab code used for computations in our paper: An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling, Nat. Commun. 2018.
StochSens Matlab package: sensitivity analysis and Fisher information computation for stochastic models of chemical kinetics (paper).